Match details
Record ID: |
KT597278.1 |
Database: |
nt |
Go to original record |
Description: |
Tetrastigma cf. scariosum PBP-2017 isolate 3299 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Tetrastigma cf. scariosum PBP-2017 |
Original size: |
983 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
552 |
+ |
552 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51 acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccagaa aacgctaata
151 aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa caaaaatgga
201 gttgactatg ttacgatgtt aaacgaatcc ttccatcaaa actctagaac
251 cagaaaggat gaaggataaa cctatataca taggtactga aatattatat
301 caaatgatta atgatggctc gaatctctat tttttatatg aaaaatgaaa
351 gaattgttgt aaatcgattc caatattcat tgatcaaatc attcactcca
401 tagtccgata gatcatttga agaacggatt aatcggacga gaataaagag
451 agagtcccat tctacatgtc aatatcgaca gcaatgaaat ttatagtaag
501 aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551 cc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
552 |
533 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.