Amplicon details

Amplicon:

552 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51    acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101   gggcaatcct gagccaaatc ctgttttccg aaaaccagaa aacgctaata
151   aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa caaaaatgga
201   gttgactatg ttacgatgtt aaacgaatcc ttccatcaaa actctagaac
251   cagaaaggat gaaggataaa cctatataca taggtactga aatattatat
301   caaatgatta atgatggctc gaatctctat tttttatatg aaaaatgaaa
351   gaattgttgt aaatcgattc caatattcat tgatcaaatc attcactcca
401   tagtccgata gatcatttga agaacggatt aatcggacga gaataaagag
451   agagtcccat tctacatgtc aatatcgaca gcaatgaaat ttatagtaag
501   aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551   cc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KT597276.1 nt Tetrastigma cf. scariosum PBP-2017 ... 981 bp Tetrastigma cf. scariosum PBP-2017 QL-PLN-00-007 552 bp View
KT597270.1 nt Tetrastigma cf. scariosum PBP-2017 ... 966 bp Tetrastigma cf. scariosum PBP-2017 QL-PLN-00-007 552 bp View
KT597272.1 nt Tetrastigma cf. scariosum PBP-2017 ... 984 bp Tetrastigma cf. scariosum PBP-2017 QL-PLN-00-007 552 bp View
KT597278.1 nt Tetrastigma cf. scariosum PBP-2017 ... 983 bp Tetrastigma cf. scariosum PBP-2017 QL-PLN-00-007 552 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.