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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KT387722.1 nt Orobanche cernua var. cumana chloro... 89851 bp Orobanche cernua var. cumana QL-PLN-00-007 569 bp View
KT428154.1 nt Scrophularia dentata voucher XZ2014... 152553 bp Scrophularia dentata QL-PLN-00-007 564 bp View
KT428378.1 nt Pseudosasa japonica isolate Pjc_a-1... 139633 bp Pseudosasa japonica QL-PLN-00-007 614 bp View
KT445939.1 nt Sinopodophyllum hexandrum chloropla... 157203 bp Sinopodophyllum hexandrum QL-PLN-00-007 539 bp View
KT597217.1 nt Cayratia trifolia isolate 3233 tRNA... 980 bp Causonis trifolia QL-PLN-00-007 571 bp View
KT597224.1 nt Tetrastigma cf. loheri PBP-2017 iso... 1024 bp Tetrastigma cf. loheri PBP-2017 QL-PLN-00-007 581 bp View
KT597230.1 nt Tetrastigma cf. loheri PBP-2017 iso... 1022 bp Tetrastigma cf. loheri PBP-2017 QL-PLN-00-007 581 bp View
KT597233.1 nt Tetrastigma cf. loheri PBP-2017 iso... 1018 bp Tetrastigma cf. loheri PBP-2017 QL-PLN-00-007 581 bp View
KT597236.1 nt Tetrastigma cf. loheri PBP-2017 iso... 983 bp Tetrastigma cf. loheri PBP-2017 QL-PLN-00-007 581 bp View
KT597248.1 nt Tetrastigma sp. A PBP-2017 isolate ... 1022 bp Tetrastigma sp. A PBP-2017 QL-PLN-00-007 581 bp View
KT597253.1 nt Tetrastigma cf. ellipticum PBP-2017... 1008 bp Tetrastigma cf. ellipticum PBP-2017 QL-PLN-00-007 579 bp View
KT597262.1 nt Tetrastigma papillosum isolate 2969... 1020 bp Tetrastigma papillosum QL-PLN-00-007 581 bp View
KT597269.1 nt Tetrastigma cf. ellipticum PBP-2017... 996 bp Tetrastigma cf. ellipticum PBP-2017 QL-PLN-00-007 579 bp View
KT597270.1 nt Tetrastigma cf. scariosum PBP-2017 ... 966 bp Tetrastigma cf. scariosum PBP-2017 QL-PLN-00-007 552 bp View
KT597271.1 nt Tetrastigma harmandii isolate 3206 ... 1022 bp Tetrastigma harmandii QL-PLN-00-007 585 bp View
KT597272.1 nt Tetrastigma cf. scariosum PBP-2017 ... 984 bp Tetrastigma cf. scariosum PBP-2017 QL-PLN-00-007 552 bp View
KT597273.1 nt Tetrastigma sp. A PBP-2017 isolate ... 1022 bp Tetrastigma sp. A PBP-2017 QL-PLN-00-007 581 bp View
KT597274.1 nt Tetrastigma cf. ellipticum PBP-2017... 969 bp Tetrastigma cf. ellipticum PBP-2017 QL-PLN-00-007 578 bp View
KT597275.1 nt Tetrastigma harmandii isolate 3283 ... 1020 bp Tetrastigma harmandii QL-PLN-00-007 585 bp View
KT597276.1 nt Tetrastigma cf. scariosum PBP-2017 ... 981 bp Tetrastigma cf. scariosum PBP-2017 QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.