Match details
Record ID: |
KT597262.1 |
Database: |
nt |
Go to original record |
Description: |
Tetrastigma papillosum isolate 2969 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Tetrastigma papillosum |
Original size: |
1020 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
582 |
+ |
581 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51 acctactaag tgataacttt caaattcagg gaacccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccagaa aacgctaata
151 aaaaaaggat aggtgcagag actcaatgga agctgttcta acaaaaacaa
201 atggagttga ctatgttacg atgttaaacg aatccttcca tcaaaactcc
251 agaaccagaa aggatgaagg atacacctat atacataggt actgaaatat
301 tatatcaaat gattaatgat ggctcgaatc tctatttttt tatatgaaaa
351 atgaaagaat tgttgtaaat cgattccaag ttgaagaaag aaaagaatcg
401 aatattcatt gatcaaatca ttcactccat agtccgatag atcatttgaa
451 gaactgatta atcggacgag aataaagaga gagtcccatt ctacatgtca
501 atatcgacag caatgaaatt tatagtaaga ggaaaatccg tcgactttaa
551 aaatcgtgag ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
581 |
562 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.