Match details
Record ID: |
KT597253.1 |
Database: |
nt |
Go to original record |
Description: |
Tetrastigma cf. ellipticum PBP-2017 isolate 2524 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Tetrastigma cf. ellipticum PBP-2017 |
Original size: |
1008 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
580 |
+ |
579 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51 acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccggaa aacgctaata
151 aaaaagaaag gataggtgca gagactcaat ggaagctgtt ctaacaaaaa
201 caaatggagt tgactatgtt acttaaatga atccttccat caaaactcca
251 gaaccagaaa ggatgaagga taaacctata tacataggta ctggtaatga
301 aatattatat caaatgatta atgatggctc gaatctctat ttttttatat
351 gaaaaatgaa agaattgttg taaatcgatt ccaaaaagaa aagaatcgaa
401 tattcattga tcaaatcatt cactccatag tccgatagat catttgaaga
451 acggattaat cggacgagaa taaagagaga gtcccattct acatgtcaat
501 atcgacagca atgaaattta tagtaagagg aaaatccgtc gactttaaaa
551 atcgtgaggg ttcaagtccc tctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.61e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
579 |
560 |
2.61e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.