Amplicon details

Amplicon:

579 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51    acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101   gggcaatcct gagccaaatc ctgttttccg aaaaccggaa aacgctaata
151   aaaaagaaag gataggtgca gagactcaat ggaagctgtt ctaacaaaaa
201   caaatggagt tgactatgtt acttaaatga atccttccat caaaactcca
251   gaaccagaaa ggatgaagga taaacctata tacataggta ctggtaatga
301   aatattatat caaatgatta atgatggctc gaatctctat ttttttatat
351   gaaaaatgaa agaattgttg taaatcgatt ccaaaaagaa aagaatcgaa
401   tattcattga tcaaatcatt cactccatag tccgatagat catttgaaga
451   acggattaat cggacgagaa taaagagaga gtcccattct acatgtcaat
501   atcgacagca atgaaattta tagtaagagg aaaatccgtc gactttaaaa
551   atcgtgaggg ttcaagtccc tctatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KT597269.1 nt Tetrastigma cf. ellipticum PBP-2017... 996 bp Tetrastigma cf. ellipticum PBP-2017 QL-PLN-00-007 579 bp View
KT597253.1 nt Tetrastigma cf. ellipticum PBP-2017... 1008 bp Tetrastigma cf. ellipticum PBP-2017 QL-PLN-00-007 579 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.