Match details
Record ID: |
KT597233.1 |
Database: |
nt |
Go to original record |
Description: |
Tetrastigma cf. loheri PBP-2017 isolate 3296 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Tetrastigma cf. loheri PBP-2017 |
Original size: |
1018 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
582 |
+ |
581 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51 acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ccgttttccg aaaaccagaa aacgctaata
151 aaaaaaggat aggtgcagag actcaatgga agctgttcta acaaaaacaa
201 atggagttga ctatgttacg atgttaaacg aatccttcca tcaaaactcc
251 agaaccagaa aggatgaagg ataaacctat atacataggt actgaaatat
301 tatatcaaat gattaatgat ggctcgaatc tctatttttt tatatgaaaa
351 atgaaagaat tgttgtaaat cgattccaag ttgaagaaag aaaagaatcg
401 aatattcatt gatcaaatca ttcactccat agtccgatag atcatttgaa
451 gaacttatta atcggacgag aataaagaga gagtcccatt ctacatgtca
501 atatcgacag caatgaaatt tatagtaaga ggaaaatccg tcgactttaa
551 aaatcgtgag ggttcaagtc cctctatccc c
View other 9 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
581 |
562 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.