Match details
Record ID: |
KT597271.1 |
Database: |
nt |
Go to original record |
Description: |
Tetrastigma harmandii isolate 3206 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Tetrastigma harmandii |
Original size: |
1022 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
586 |
+ |
585 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51 acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccagaa aacgctaata
151 aaaaaaggat aggtgcagag actcaatgga agctgttcta acaaaaacaa
201 atggagttga ctatgttacg atgttaaacg aatccttcca tcaaaactcc
251 agaacccgaa aggatgaagg ataaacctat atacataggt actgaatgaa
301 atattatatc aaatgattaa tgatggctcg aatctctatt tttttatatg
351 aaaaatgaaa gaattgttgt aaatcgattc caagttgaag aaagaaaaga
401 atcgaatatt cattgatcaa atcattcact ccatagtccg atagatcatt
451 tgaagaactg attaatcgga cgagaataaa gagagagtcc cattctacat
501 gtcaatatcg acagcaatga aatttatagt aagaggaaaa tccgtcgact
551 ttaaaaatcg tgagggttca agtccctcta tcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.63e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
585 |
566 |
2.63e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.