Amplicon details

Amplicon:

585 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51    acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101   gggcaatcct gagccaaatc ctgttttccg aaaaccagaa aacgctaata
151   aaaaaaggat aggtgcagag actcaatgga agctgttcta acaaaaacaa
201   atggagttga ctatgttacg atgttaaacg aatccttcca tcaaaactcc
251   agaacccgaa aggatgaagg ataaacctat atacataggt actgaatgaa
301   atattatatc aaatgattaa tgatggctcg aatctctatt tttttatatg
351   aaaaatgaaa gaattgttgt aaatcgattc caagttgaag aaagaaaaga
401   atcgaatatt cattgatcaa atcattcact ccatagtccg atagatcatt
451   tgaagaactg attaatcgga cgagaataaa gagagagtcc cattctacat
501   gtcaatatcg acagcaatga aatttatagt aagaggaaaa tccgtcgact
551   ttaaaaatcg tgagggttca agtccctcta tcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KT597271.1 nt Tetrastigma harmandii isolate 3206 ... 1022 bp Tetrastigma harmandii QL-PLN-00-007 585 bp View
KT597275.1 nt Tetrastigma harmandii isolate 3283 ... 1020 bp Tetrastigma harmandii QL-PLN-00-007 585 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.