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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ729800.1 nt Reaumuria turkestanica clone 4 tRNA... 1029 bp Reaumuria turkestanica QL-PLN-00-007 573 bp View
KJ729801.1 nt Reaumuria turkestanica clone 5 tRNA... 1028 bp Reaumuria turkestanica QL-PLN-00-007 573 bp View
KJ729803.1 nt Reaumuria turkestanica clone 7 tRNA... 1029 bp Reaumuria turkestanica QL-PLN-00-007 574 bp View
KJ729804.1 nt Reaumuria vermiculata clone 1 tRNA-... 1038 bp Reaumuria vermiculata QL-PLN-00-007 573 bp View
KJ729805.1 nt Reaumuria vermiculata clone 2 tRNA-... 1020 bp Reaumuria vermiculata QL-PLN-00-007 568 bp View
KJ729806.1 nt Myricaria alopecuroides tRNA-Leu (t... 1044 bp Myricaria alopecuroides QL-PLN-00-007 592 bp View
KJ729807.1 nt Myricaria bracteata tRNA-Leu (trnL)... 1056 bp Myricaria bracteata QL-PLN-00-007 592 bp View
KJ729808.1 nt Myricaria davurica tRNA-Leu (trnL) ... 1059 bp Myricaria davurica QL-PLN-00-007 590 bp View
KJ729809.1 nt Myricaria longifolia tRNA-Leu (trnL... 1058 bp Myricaria longifolia QL-PLN-00-007 589 bp View
KJ729810.1 nt Myricaria squamosa tRNA-Leu (trnL) ... 1045 bp Myricaria squamosa QL-PLN-00-007 592 bp View
KJ729811.1 nt Tamarix karakalensis tRNA-Leu (trnL... 1036 bp Tamarix karakalensis QL-PLN-00-007 578 bp View
KJ729812.1 nt Tamarix meyeri tRNA-Leu (trnL) gene... 1041 bp Tamarix meyeri QL-PLN-00-007 585 bp View
KJ729813.1 nt Tamarix ramosissima tRNA-Leu (trnL)... 1047 bp Tamarix ramosissima QL-PLN-00-007 591 bp View
KJ746809.1 nt Poa sp. Alt 10-228 tRNA-Leu (trnL) ... 1024 bp Poa sp. Alt 10-228 QL-PLN-00-007 611 bp View
KJ746811.1 nt Poa attenuata voucher Alt 11-91 tRN... 1022 bp Poa attenuata QL-PLN-00-007 611 bp View
KJ768333.1 nt Taxus contorta isolate MK11 tRNA-Le... 854 bp Taxus contorta QL-PLN-00-007 522 bp View
KJ768334.1 nt Taxus contorta isolate ME10 tRNA-Le... 854 bp Taxus contorta QL-PLN-00-007 522 bp View
KJ768335.1 nt Taxus wallichiana isolate DS13 tRNA... 903 bp Taxus wallichiana QL-PLN-00-007 522 bp View
KJ768336.1 nt Taxus wallichiana isolate KA02 tRNA... 861 bp Taxus wallichiana QL-PLN-00-007 522 bp View
KJ768337.1 nt Taxus wallichiana isolate KD14 tRNA... 882 bp Taxus wallichiana QL-PLN-00-007 522 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.