Match details
Record ID: |
KJ729805.1 |
Database: |
nt |
Go to original record |
Description: |
Reaumuria vermiculata clone 2 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Reaumuria vermiculata |
Original size: |
1020 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
578 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag agaaaccctg
101 gaattaataa aaatgggcaa tcctgagcca actcctgttt tcaaaaaagt
151 aaaaaaaatt attaaagtga gaagaaatga tggataggtg cagagactca
201 acggaagctg ttctaacaaa tggagttgac tgcgttgtta taagaattct
251 tccatcaaaa cttaaaaaaa gatcaagaca aaccctatat ttagataaat
301 acgtactgaa atactctaaa aaataaaaaa cgtcttaata ataatggcgg
351 ccaaaatatg tcttttttat atgaaaaatg gaagaatatt catttatcaa
401 agtattcgct ccatggtctg atagattttt ttttgacgaa ctgctcaatc
451 ggacgagaat aaagatagag tcccattcta catgtcaata ctgacaacaa
501 tgaaatttat agtatgagga aaatccgtcg actttagaaa tcgtgagggt
551 tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.