Match details
Record ID: |
KJ729810.1 |
Database: |
nt |
Go to original record |
Description: |
Myricaria squamosa tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Myricaria squamosa |
Original size: |
1045 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
602 |
+ |
592 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag agaaaccctg
101 gaattaataa aaatggggca atcctgagcc aactcctgtt ttcaaaaatc
151 aaaaagtaaa aaaaaaattc ttaaagcgat aataaataat ggataggtgc
201 agagactcaa cggaagctgt tctaacaaat ggagtttact gtgttgttat
251 aagaattatt ccataacaac tgcaaaaaaa agatgaagaa aaaccctata
301 tctagataaa tacgtactag aaatacttta aaaaataaaa aaacgtatta
351 atgacggcca aaatatgtct tttttacctt ttgtatagga aaaaatggaa
401 gaatattaat ttataaaagt attcactcca tggtctgata gatctttttt
451 ttttttttga cgaactgctc aatcggacga gaatgaagat agagtcccat
501 tctacatgtc aatactgaca acaatgaaat ttatagtatg aggaaaatcc
551 gtcgacttta gaaatcgtga gggttcaagt ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
592 |
573 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.