Match details
Record ID: |
KJ729809.1 |
Database: |
nt |
Go to original record |
Description: |
Myricaria longifolia tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Myricaria longifolia |
Original size: |
1058 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
599 |
+ |
589 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag agaaaccctg
101 gaattaataa aaatggggca atcctgagcc aactcctgtt ttcaaaataa
151 aaaagtaaaa aaaaaattat taaagcgata ataaataatg gataggtgca
201 gagactcaac ggaagctgtt ctaacaaatg gagtttactg tgttgttata
251 agaattattc cataacaact gcaaaaaaaa gatgaagaag aaccctatat
301 ctagataaat acgtactaga aatactctaa aaaataaaaa aacgtattaa
351 tgacggccaa aatatgtctt ttttaccttt tgtataggaa aaaatggaag
401 aatattaatt tataaaagta ttcactccat ggtctgatag atcttttttt
451 tttttgacga actgctcaat cggacgagaa tgaagataga gtcccattct
501 acatgtcaat actgacaaca atgaaattta tagtatgagg aaaatccgtc
551 gactttagaa atcgtgaggg ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
589 |
570 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.