Match details
Record ID: |
KJ729808.1 |
Database: |
nt |
Go to original record |
Description: |
Myricaria davurica tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Myricaria davurica |
Original size: |
1059 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
600 |
+ |
590 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag agaaaccctg
101 gaattaataa aaatggggca atcctgagcc aactcctgtt ttcaaaaata
151 aaaaagtaaa aaaaaaatta ttaaagcgat aataaataat ggataggtgc
201 agagactcaa cggaagctgt tctaacaaat ggagtttact gtgttgttat
251 aagaattatt ccataacaac tgcaaaaaaa agatgaagaa gaaccctata
301 tctagataaa tacgtactag aaatactcta aaaaataaaa aaacgtatta
351 atgacggcca aaatatgtct tttttacctt ttgtatagga aaaaatggaa
401 gaatattaat ttataaaagt attccctcca tggtctgata gatctttttt
451 ttttttgacg aactgctcaa tcggacgaga atgaagatag agtcccattc
501 tacatgtcaa tactgacaac aatgaaattt atagtatgag gaaaatccgt
551 cgactttaga aatcgtgagg gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
590 |
571 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.