Match details
Record ID: |
KJ729801.1 |
Database: |
nt |
Go to original record |
Description: |
Reaumuria turkestanica clone 5 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Reaumuria turkestanica |
Original size: |
1028 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
11 |
583 |
+ |
573 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggcatgctg
51 actagtaggg aacctactaa gtgataactt tcaaattcag aaaaaccctg
101 gaattaataa aaatgggcaa tcctgagcca actcctgttt tcaaaacagt
151 aaaaaaaaat tattaaagtg agaagaaatg atggataggt gcagagactc
201 aacggaagct gttctaacaa atggagttga ctgcgttgtt ataagaattc
251 ttccatcaaa acttaaaaaa agatcaagac aaaccctata tttagaattt
301 agataaatac gtactgaaat actctaaaaa agaaaaaaac gtcttaatgg
351 gcggacaaaa tatgtctttt tatatgaaaa agtggaagaa tattcattta
401 taaaagtatt cgctccatgg tccgatagat cttttttttg acgaactgct
451 caatcggacg agaatgaaga tagagtccca ttctacatgt caatactgac
501 aacaatgaaa tttatagtat gaggaaaatc cgtcgacttt agaaatcgtg
551 agggttcaag tccctctatc ccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.58e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
573 |
554 |
2.58e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.