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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JQ007383.1 nt Juglans environmental sample clone ... 600 bp Juglans environmental sample QL-PLN-00-007 599 bp View
JQ007386.2 nt Picea environmental sample clone E1... 563 bp Picea environmental sample QL-PLN-00-007 562 bp View
JQ007388.1 nt Picea environmental sample clone E2... 563 bp Picea environmental sample QL-PLN-00-007 562 bp View
JQ007389.2 nt Picea environmental sample clone E2... 563 bp Picea environmental sample QL-PLN-00-007 562 bp View
JQ007391.2 nt Picea environmental sample clone F1... 563 bp Picea environmental sample QL-PLN-00-007 562 bp View
JQ007395.2 nt Picea environmental sample clone F2... 563 bp Picea environmental sample QL-PLN-00-007 562 bp View
JQ007397.2 nt Picea environmental sample clone F2... 563 bp Picea environmental sample QL-PLN-00-007 562 bp View
JQ007398.2 nt Picea environmental sample clone F2... 563 bp Picea environmental sample QL-PLN-00-007 562 bp View
JQ007399.3 nt Picea environmental sample clone G1... 563 bp Picea environmental sample QL-PLN-00-007 562 bp View
JQ007401.1 nt Vitis environmental sample clone G1... 594 bp Vitis environmental sample QL-PLN-00-007 592 bp View
JQ007406.2 nt Picea environmental sample clone I3... 563 bp Picea environmental sample QL-PLN-00-007 562 bp View
JQ007407.1 nt Trifolium environmental sample clon... 610 bp Trifolium environmental sample QL-PLN-00-007 610 bp View
JQ007409.1 nt Trifolium environmental sample clon... 621 bp Trifolium environmental sample QL-PLN-00-007 620 bp View
JQ007410.1 nt Trifolium environmental sample clon... 610 bp Trifolium environmental sample QL-PLN-00-007 610 bp View
JQ007411.1 nt Plantago environmental sample clone... 582 bp Plantago environmental sample QL-PLN-00-007 582 bp View
JQ322787.1 nt Ibicella lutea tRNA-Leu (trnL) gene... 967 bp Ibicella lutea QL-PLN-00-007 563 bp View
JQ322788.1 nt Craniolaria integrifolia tRNA-Leu (... 1093 bp Craniolaria integrifolia QL-PLN-00-007 562 bp View
JQ322789.1 nt Proboscidea triloba subsp. triloba ... 1270 bp Proboscidea triloba subsp. triloba QL-PLN-00-007 564 bp View
JQ682658.1 nt Goodenia convexa voucher CBG 890566... 928 bp Goodenia convexa QL-PLN-00-007 521 bp View
JQ682797.1 nt Goodenia pterigosperma voucher UPS ... 920 bp Goodenia pterigosperma QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.