Match details
Record ID: |
JQ322788.1 |
Database: |
nt |
Go to original record |
Description: |
Craniolaria integrifolia tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Craniolaria integrifolia |
Original size: |
1093 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
130 |
691 |
+ |
562 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgcgttggt agaggaatct ttccatcgaa acttcagaaa
251 ggatgaagga taaacgtatc tattgaatac tatatcaaat gattaatgat
301 ggcccgaatc tgtatctgta tttttttata tgaaaaatgg aagaattggt
351 gtgaattgat tccacattga agaaagaatc gaatattcat tcatcaaatc
401 attcactcca tagtccgata gatcttttaa agaactgatt aatcggacga
451 gaataaagat agagtcccat tctacatgtc aataccggca acaatgaaat
501 ttatagtaag aggaaaatcc gtcgacttaa aaaatcgtga gggttcaagt
551 ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.