Match details
Record ID: |
JQ007401.1 |
Database: |
nt |
Go to original record |
Description: |
Vitis environmental sample clone G1C6 tRNA-Leu (trnL) gene, partial sequence; plastid. |
Taxon: |
Vitis environmental sample |
Original size: |
594 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
593 |
+ |
592 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcca taatatggaa
51 acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc ctgttttccg aaaacaacca agggttcaga
151 aaacgatatt aaaaaaagga taggtgcaga gactcaatag aagctgttct
201 aacaaaaaca aatggagttg actatgttgc gttgttaaac gaatccttcc
251 atcaaaactc cagaaccaga aaggatgaag gataaaccta tatacatagg
301 tactgaaata ttatatcaaa tgattaatga tggctcgaat ctgtattttt
351 tgatatgaaa aatgaaagaa ttgttgtaaa tcgattccaa gttgaagaaa
401 gaaaagaatc gaatattcat tgatcaaatc attcactcca tagtccgata
451 gatcttttga agaactgatt aatcggacga gaataaagat agagtcccat
501 tctacatgtc aataccgaca acaatgaaat ttatagtaag aggaaaatcc
551 gtcgacttta aaaatcgtga gggttcaagt ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
592 |
573 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.