Match details
Record ID: |
JQ007411.1 |
Database: |
nt |
Go to original record |
Description: |
Plantago environmental sample clone IC1P2_8 tRNA-Leu (trnL) gene, partial sequence; plastid. |
Taxon: |
Plantago environmental sample |
Original size: |
582 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
582 |
+ |
582 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactagg tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtctt ctcaaaataa aggttcagaa
151 agcgagaaaa agggataggt gcagagactc gatggaagct gttctaaaac
201 aaatggagtt gactgcgttg gtagataaat tttttcatcg aaacttcaga
251 aaggatgaag gataaacgta tctattctat tgaatactaa aatatctaaa
301 aaaatgaatg acggcccgag tcggtatctg tatttttttt tagatgaaag
351 atggaagaat tggtgtgaat tggttccaca ttcaagaatg aatcgaatat
401 tcattcatca aatcacccca ctccatagtc tgatagttct ttttaaaaag
451 aacttatatt aattggacga gaataaagat agagtcccgt tctacatgtc
501 aataccgaca gcaatgaaat ttatagtaat aggaaaatcc gtcgactttt
551 aaaatcgtga gggttcaagt ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
582 |
563 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.