Match details
Record ID: |
JQ007407.1 |
Database: |
nt |
Go to original record |
Description: |
Trifolium environmental sample clone IC1P2.15 tRNA-Leu (trnL) gene, partial sequence; plastid. |
Taxon: |
Trifolium environmental sample |
Original size: |
610 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
610 |
+ |
610 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgaaaacttt caaattcaga gaaaccctgg aattaaaaag
101 gggcaatcct gagccaaatc cttctttccg aaaacaaaat aaaagttcag
151 aaagtgaaaa tcaaaaaggg ataggtgcag agactcaatg gaagctgttc
201 taacaactgg agttgacaac atttcccttg gaagtaggaa aggaatcgtt
251 ctatccaact tccagaaagg aaaagataaa gatatatata acatatatat
301 gtactcaaat actctttcaa ttgattaatg aagacttcta acgtctattt
351 gtaaattgac actatttctt ttctatcaca aatgaaagat ttgaatcaaa
401 tcaattacaa ctggaataaa aaatgaaata ttcattgatc aaatcagtca
451 ctccaccaca gtctggtgaa tcttttgaat aaccgattaa tcagacgaga
501 ataaagatag agtcccattc tacatgtcaa taccgacatc aatgaaattt
551 ttagtaagag gaaaatccgt cgactttaga aatcgtgagg gttcaagtcc
601 ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
610 |
591 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.