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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HM066935.1 emblreltgn Nicotiana tabacum transgenic chloro... 17958 bp Nicotiana tabacum QL-PLN-00-007 577 bp View
HM100591.1 nt Gordonia lasianthus isolate 4191 tR... 1028 bp Gordonia lasianthus QL-PLN-00-007 598 bp View
HM100592.1 nt Stewartia cordifolia isolate 4564 t... 1010 bp Stewartia cordifolia QL-PLN-00-007 588 bp View
HM100594.1 nt Stewartia laotica isolate 4812 tRNA... 1012 bp Stewartia laotica QL-PLN-00-007 589 bp View
HM100596.1 nt Stewartia pteropetiolata isolate 80... 1004 bp Stewartia pteropetiolata QL-PLN-00-007 588 bp View
HM100597.1 nt Stewartia pteropetiolata isolate 80... 1003 bp Stewartia pteropetiolata QL-PLN-00-007 588 bp View
HM100598.1 nt Stewartia sinii isolate 4550 tRNA-L... 1011 bp Stewartia sinii QL-PLN-00-007 588 bp View
HM100601.1 nt Stewartia tonkinensis isolate 4556 ... 1010 bp Stewartia tonkinensis QL-PLN-00-007 587 bp View
HM100602.1 nt Stewartia villosa isolate 8055 tRNA... 1009 bp Stewartia villosa QL-PLN-00-007 587 bp View
HM100603.1 nt Schima argentea isolate 5890 tRNA-L... 969 bp Schima argentea QL-PLN-00-007 598 bp View
HM100605.1 nt Schima khasiana isolate 4792 tRNA-L... 1026 bp Schima khasiana QL-PLN-00-007 598 bp View
HM100612.1 nt Stewartia sinensis var. acutisepala... 1008 bp Stewartia sinensis var. acutisepala QL-PLN-00-007 586 bp View
HM100614.1 nt Stewartia sinensis isolate 8019 tRN... 1009 bp Stewartia sinensis QL-PLN-00-007 586 bp View
HM100616.1 nt Stewartia sinensis isolate 8056 tRN... 1008 bp Stewartia sinensis QL-PLN-00-007 586 bp View
HM100625.1 nt Stewartia monadelpha isolate 4876 t... 1008 bp Stewartia monadelpha QL-PLN-00-007 586 bp View
HM100632.1 nt Stewartia ovata isolate 1601 tRNA-L... 1011 bp Stewartia ovata QL-PLN-00-007 589 bp View
HM164304.1 nt Airosperma trichotomum voucher Dege... 1702 bp Airosperma trichotomum QL-PLN-00-007 570 bp View
HM164305.1 nt Aleisanthia rupestris voucher Tange... 1236 bp Aleisanthia rupestris QL-PLN-00-007 565 bp View
HM164306.1 nt Aleisanthiopsis distantiflora vouch... 1763 bp Aleisanthiopsis distantiflora QL-PLN-00-007 565 bp View
HM164307.1 nt Aoranthe penduliflora voucher Ivers... 1669 bp Aoranthe penduliflora QL-PLN-00-007 576 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.