Match details
Record ID: |
HM100601.1 |
Database: |
nt |
Go to original record |
Description: |
Stewartia tonkinensis isolate 4556 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Stewartia tonkinensis |
Original size: |
1010 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
588 |
+ |
587 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt tcgaaaacaa acaaagattc
151 agaaagcgaa aataaaaaaa aggataggtg cagagactca atggaagctg
201 ttctaacaaa tggagttgac tgcgttggta gaggaatcct tccatcgaaa
251 cttcagaaag gatgaaagag aaacctatat acatacgcat acgtactgaa
301 atactatatc aaatgattaa tgacgaccca aatctgtatc cgtatttttt
351 ttttatgaaa aatggaagaa ttgttgtgaa tcgattccac gttgaataaa
401 gaattgaata ttcattgatc aaatcattta ctccatagtt tgatagatct
451 tttgaagaac tgattaatcg gacgagaata aagatagagt cccattctac
501 atgtcaatac cgacaacaat gaaatttata gtaagaggaa aatccgtcga
551 ctttagaaat cgtgagggtt caagtccctc tatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.64e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
587 |
568 |
2.64e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.