Amplicon details

Amplicon:

587 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt tcgaaaacaa acaaagattc
151   agaaagcgaa aataaaaaaa aggataggtg cagagactca atggaagctg
201   ttctaacaaa tggagttgac tgcgttggta gaggaatcct tccatcgaaa
251   cttcagaaag gatgaaagag aaacctatat acatacgcat acgtactgaa
301   atactatatc aaatgattaa tgacgaccca aatctgtatc cgtatttttt
351   ttttatgaaa aatggaagaa ttgttgtgaa tcgattccac gttgaataaa
401   gaattgaata ttcattgatc aaatcattta ctccatagtt tgatagatct
451   tttgaagaac tgattaatcg gacgagaata aagatagagt cccattctac
501   atgtcaatac cgacaacaat gaaatttata gtaagaggaa aatccgtcga
551   ctttagaaat cgtgagggtt caagtccctc tatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
HM100602.1 nt Stewartia villosa isolate 8055 tRNA... 1009 bp Stewartia villosa QL-PLN-00-007 587 bp View
HM100601.1 nt Stewartia tonkinensis isolate 4556 ... 1010 bp Stewartia tonkinensis QL-PLN-00-007 587 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.