Match details
Record ID: |
HM100605.1 |
Database: |
nt |
Go to original record |
Description: |
Schima khasiana isolate 4792 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Schima khasiana |
Original size: |
1026 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
598 |
+ |
598 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt tcgaaaacaa acaaagattc
151 agaaagcgaa aatcaaaaaa ggataggtgc agagactcaa tggaagctgt
201 tctaacaaat ggagttgact gcgttggtag aggaatcctt ccatcgaaac
251 ttcagacgaa acttcagaaa ggatgaaaga gaaacctata tacatacgca
301 tacgtactga aatactatat caaatgatta atgacgaccc aaatctgtat
351 ccgtattttt tttatatgaa aaatggaaga attgttgtga atcgattcca
401 cgttgaataa agaattgaat attcattgat caaatcattt actccatagt
451 ttgatagatc ttttgaagaa ctgattaatc ggacaagaat aaagatagag
501 tcccattcta catgtcaata ccgacaacaa tgaaatttat agtaagagga
551 aaatccgtcg actttagaaa tcgtgagggt tcaagtccct ctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
598 |
579 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.