Match details
Record ID: |
HM100632.1 |
Database: |
nt |
Go to original record |
Description: |
Stewartia ovata isolate 1601 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Stewartia ovata |
Original size: |
1011 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
589 |
+ |
589 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt tcgaaaacaa acaaagattc
151 agaaagcgaa aataaaaaaa aaggataggt gcagagactc aatggaagct
201 gttctaacaa atggagttga ctgcgttggt agaggaatcc ttccatcgaa
251 acttcagaaa ggatgaaaga gaaacctata tacatacgca tacgtactaa
301 aatactatat caaatgatta atgacgaccc aaatctgtat ccgtattttt
351 ttttttatga aaaatggaag aattgttgtg aatcgattcc acgttgaata
401 aagaattgaa tattcattga tcaaatcatt tactccatag tttgatagat
451 cttttgaaga actgattaat cggacgagaa taaagataga gtcccattct
501 acatgtcaat accgacaaca atgaaattta tagtaagagg aaaatccgtc
551 gactttagaa atcgtgaggg ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
589 |
570 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.