Match details
Record ID: |
HM100598.1 |
Database: |
nt |
Go to original record |
Description: |
Stewartia sinii isolate 4550 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Stewartia sinii |
Original size: |
1011 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
2 |
589 |
+ |
588 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt tcgaaaacaa acaaagattc
151 agaaagcgaa aataaaaaaa aggataggtg cagagactca atggaagctg
201 ttctaacaaa tggagttgac tgcgttggta gaggaatcct tccatcgaaa
251 cttcagaaag gatgaaagag aaacctatat acatacgcat acgtactgaa
301 atactatatc aaatgattaa tgacgaccca aatctgtatc cgtatttttt
351 tttttatgaa aaatggaaga attgttgtga atcgattcca cgttgaataa
401 agaattgaat attcattgat caaatcattt actccatagt ttgatagatc
451 ttttgaagaa ctgattaatc ggacgagaat aaagatagag tcccattcta
501 catgtcaata ccgacaacaa tgaaatttat agtaagagga aaatccgtcg
551 actttagaaa tcgtgagggt tcaagtccct ctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
588 |
569 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.