Match details
Record ID: |
HM100616.1 |
Database: |
nt |
Go to original record |
Description: |
Stewartia sinensis isolate 8056 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Stewartia sinensis |
Original size: |
1008 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
586 |
+ |
586 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt tcgaaaacaa acaaagattc
151 agaaagcgaa aataaaaaaa aggataggtg cagagactca atggaagctg
201 ttctaacaaa tggagttgac tgcgttggta gaggaatcct tccatcgaaa
251 cttcagaaag gatgaaagag aaacctatat acatacgcat acgtactgaa
301 atactatatc aaatgattaa tgacgaccca aatctgtatc cgtatttttt
351 tttatgaaac atggaagaat tgttgtgaat cgattccacg ttgaataaag
401 aattgaatat tcattgatca aatcatttac tccatagttt gatagatctt
451 ttgaagaact gattaatcgg acgagaataa agatagagtc ccattctaca
501 tgtcaatacc gacaacaatg aaatttatag taagaggaaa atccgtcgac
551 tttagaaatc gtgagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.64e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
586 |
567 |
2.64e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.