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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FJ801104.1 nt Bauhinia chapulhuacania voucher Wun... 1080 bp Bauhinia chapulhuacania QL-PLN-00-007 598 bp View
FJ801105.1 nt Bauhinia corniculata voucher Solomo... 1080 bp Bauhinia corniculata QL-PLN-00-007 598 bp View
FJ801106.1 nt Bauhinia pentandra voucher Krapovic... 1080 bp Bauhinia pentandra QL-PLN-00-007 598 bp View
FJ801107.1 nt Bauhinia bauhinioides voucher Merel... 1080 bp Bauhinia bauhinioides QL-PLN-00-007 598 bp View
FJ801108.1 nt Gigasiphon macrosiphon voucher Roya... 1027 bp Gigasiphon macrosiphon QL-PLN-00-007 596 bp View
FJ801109.1 nt Bauhinia subclavata voucher Kajita ... 1087 bp Bauhinia subclavata QL-PLN-00-007 602 bp View
FJ801110.1 nt Bauhinia ungulata voucher Bruneau 1... 1052 bp Bauhinia ungulata QL-PLN-00-007 602 bp View
FJ801111.1 nt Bauhinia sp. CS-2009 voucher Brunea... 1046 bp Bauhinia sp. CS-2009 QL-PLN-00-007 596 bp View
FJ801112.1 nt Bauhinia subrotundifolia voucher Br... 1048 bp Bauhinia subrotundifolia QL-PLN-00-007 598 bp View
FJ801113.1 nt Bauhinia forficata voucher Sinou s.... 1043 bp Bauhinia forficata QL-PLN-00-007 597 bp View
FJ801114.1 nt Bauhinia saigonensis voucher Fouger... 1047 bp Phanera saigonensis QL-PLN-00-007 596 bp View
FJ801115.1 nt Bauhinia blakeana voucher Fougere-D... 1050 bp Bauhinia blakeana QL-PLN-00-007 595 bp View
FJ801116.1 nt Bauhinia glabra voucher Redden 1040... 1073 bp none QL-PLN-00-007 581 bp View
FJ801117.1 nt Bauhinia glabra voucher Redden 1016... 1068 bp none QL-PLN-00-007 581 bp View
FJ801118.1 nt Phanera outimouta voucher Redden 10... 1081 bp Schnella outimouta QL-PLN-00-007 581 bp View
FJ801119.1 nt Phanera outimouta voucher Redden 10... 1068 bp Schnella outimouta QL-PLN-00-007 581 bp View
FJ801120.1 nt Bauhinia guianensis voucher Redden ... 1082 bp Schnella guianensis QL-PLN-00-007 581 bp View
FJ801121.1 nt Bauhinia guianensis voucher Redden ... 1081 bp Schnella guianensis QL-PLN-00-007 581 bp View
FJ801123.1 nt Tylosema esculentum voucher Germish... 1072 bp Tylosema esculentum QL-PLN-00-007 587 bp View
FJ801124.1 nt Tylosema fassoglense voucher Herend... 1063 bp Tylosema fassoglense QL-PLN-00-007 587 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.