Match details
Record ID: |
FJ801114.1 |
Database: |
nt |
Go to original record |
Description: |
Bauhinia saigonensis voucher Fougere-Danezan 16 (MT) tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; plastid. |
Taxon: |
Phanera saigonensis |
Original size: |
1047 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
596 |
+ |
596 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaga agagttcaaa
151 aagtgagaat aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa
201 caaatggagt tgacgggatt tcgtttcatt agtaaagtaa tccttccatc
251 gaaactccag aaaagaaagg atcaaagata aacgtatata tacgtatacg
301 taccgaaata ctatctcaac taaattaatg acgacgccga atctctattt
351 tttttgaata tttatataag aaatgaaaga tgtaaatcga ttcaaagttg
401 aggaaagagt cgaatattca ttcatcaaat cattcactcc atcataatcc
451 gatagatctt ttgaagaacc gattaatcgg acaagaataa agatagagtc
501 ccattctaca tgtcaatgct gacaacaatg aaatttatag taagaggaaa
551 atccgtcgac tttaaaaatc gtgagggttc aagtccctct atcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
596 |
577 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.