Match details
Record ID: |
FJ801119.1 |
Database: |
nt |
Go to original record |
Description: |
Phanera outimouta voucher Redden 1039 (US) tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; plastid. |
Taxon: |
Schnella outimouta |
Original size: |
1068 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
581 |
+ |
581 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaaa agagttcaaa
151 taaaaaggat aggtgcagag actcaatgga agctgttcta acaaatggag
201 ttgacgggat ttcgtttcgt tagtaaagta gtaatccttc catcgaaact
251 ccagaaaaga aaggatcaaa gataaacgta tatatacata tacgtaccga
301 aatactatct caactaaatt aatgacgacg ccgaatctct attttttcat
351 atttataatg aaagatgtaa atggattcaa agttgaggaa aaagtcgaat
401 attcattcat caaatcattc actccatcat aatccgatag atcttttgaa
451 gaactgatta atcggacaag aataaagata gagtcccatt ctacatgtca
501 atactgacaa caatgaaatt tatagtaaga ggaaaatccg tcgactttaa
551 aaatcgtgag ggttcaagtc cctctatccc c
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
581 |
562 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.