Match details
Record ID: |
FJ801123.1 |
Database: |
nt |
Go to original record |
Description: |
Tylosema esculentum voucher Germishuizen 687 (K) tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; plastid. |
Taxon: |
Tylosema esculentum |
Original size: |
1072 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
587 |
+ |
587 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaga agagttcaaa
151 aagtgagaat aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa
201 gaaatggagt tgacgggatt tcgtttcgtt agtaaagtaa tccttccatc
251 gaaactccag aaaagaaagg atcaaagata aacgtatata tacgtaccga
301 aatactatct caactaaatt aatgacgacg ccgaatctct atttttgaat
351 atttctataa gaaatgaaaa atgtaaatgg attcaaagtt gaggaaaaag
401 tcgaatattc attcatcaaa tcattcactc catcataatc cgatagatct
451 tttgaagaac tgattaatcg gacaagaata aagatagagt cccattctac
501 atgtcaatac tgacaacaat gaaatttata gtaagaggaa aatccgtcga
551 ctttagaaat cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.64e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
587 |
568 |
2.64e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.