Match details
Record ID: |
FJ801106.1 |
Database: |
nt |
Go to original record |
Description: |
Bauhinia pentandra voucher Krapovickas 36230 (USF) tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; plastid. |
Taxon: |
Bauhinia pentandra |
Original size: |
1080 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
598 |
+ |
598 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaga agagttcaaa
151 aagttagaat aaaaaggata ggtgcagaga ctcaacggaa gctgttctaa
201 caaatggagt tgacgggatt tcgtttcatt agtaaagtaa tccttccatc
251 gaaactccag aaaagaaagg atcaaagata aacgtatata tacgtatacg
301 taccgaaata ctatctcaac taaattaatg acgacgccga atctctattt
351 ttgaatattt atataagaaa tgaaagatgt aaatcgattc aaatcaaagt
401 tgaggaaaga gtcgaatatt cattcatcaa atcattcact ccatcataat
451 ccgatagatc ttttgaagaa ccgattaatc ggacaagaat aaagatagag
501 tccctttcta catgtcaatg ctgacaacaa tgaaatttat agtaagagga
551 aaatccgtcg actttaaaaa tcgtgagggt tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
598 |
579 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.