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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FJ695425.1 nt Spermacoce remota isolate H10 trnT-... 1837 bp Spermacoce remota QL-PLN-00-007 585 bp View
FJ801049.1 nt Bauhinia sp. CS-2009 voucher Pennin... 1084 bp Bauhinia sp. CS-2009 QL-PLN-00-007 602 bp View
FJ801051.1 nt Bauhinia aculeata voucher Guerere 1... 1081 bp Bauhinia aculeata QL-PLN-00-007 593 bp View
FJ801052.1 nt Bauhinia bohniana voucher Douglas 7... 1060 bp Bauhinia bohniana QL-PLN-00-007 596 bp View
FJ801053.1 nt Bauhinia forficata subsp. pruinosa ... 1047 bp Bauhinia forficata subsp. pruinosa QL-PLN-00-007 597 bp View
FJ801054.1 nt Lysiphyllum carronii voucher Weston... 1022 bp Lysiphyllum carronii QL-PLN-00-007 598 bp View
FJ801055.1 nt Bauhinia galpinii voucher Archambau... 1080 bp Bauhinia galpinii QL-PLN-00-007 596 bp View
FJ801057.1 nt Lysiphyllum gilvum voucher Weston 2... 992 bp Lysiphyllum gilvum QL-PLN-00-007 598 bp View
FJ801058.1 nt Bauhinia glabra voucher Redden 1038... 1068 bp none QL-PLN-00-007 581 bp View
FJ801059.1 nt Lysiphyllum hookeri voucher Weston ... 991 bp Lysiphyllum hookeri QL-PLN-00-007 598 bp View
FJ801064.1 nt Bauhinia natalensis voucher Kirsten... 1074 bp Bauhinia natalensis QL-PLN-00-007 593 bp View
FJ801071.1 nt Bauhinia tomentosa voucher Herendee... 1043 bp Bauhinia tomentosa QL-PLN-00-007 592 bp View
FJ801072.1 nt Bauhinia tomentosa voucher Kirstenb... 1050 bp Bauhinia tomentosa QL-PLN-00-007 592 bp View
FJ801073.1 nt Bauhinia ungulata voucher Redden 10... 1045 bp Bauhinia ungulata QL-PLN-00-007 602 bp View
FJ801074.1 nt Bauhinia blakeana voucher Bruneau s... 1049 bp Bauhinia blakeana QL-PLN-00-007 595 bp View
FJ801076.1 nt Barklya syringifolia voucher Wiecek... 1062 bp Barklya syringifolia QL-PLN-00-007 585 bp View
FJ801077.1 nt Bauhinia pottsii voucher Herendeen ... 1050 bp Bauhinia pottsii QL-PLN-00-007 596 bp View
FJ801078.1 nt Bauhinia dipetala voucher Buswell s... 1080 bp Bauhinia dipetala QL-PLN-00-007 598 bp View
FJ801079.1 nt Bauhinia monandra voucher Silversto... 1079 bp Bauhinia monandra QL-PLN-00-007 593 bp View
FJ801080.1 nt Bauhinia grandidieri voucher Fairch... 1080 bp Bauhinia grandidieri QL-PLN-00-007 593 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.