Match details
Record ID: |
FJ801073.1 |
Database: |
nt |
Go to original record |
Description: |
Bauhinia ungulata voucher Redden 1017 (US) tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; plastid. |
Taxon: |
Bauhinia ungulata |
Original size: |
1045 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
602 |
+ |
602 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaga agagttcaaa
151 aagtgagaat aaaaaggata ggtgcagaga ctcaacggaa gctgttctaa
201 caaatggagt tgacgggatt tcgtttcatt agtaagtaaa gtaatccttc
251 catcgaaact ccagaaaaga aaggatcaaa gagaaaggta tatatacgta
301 tacgtaccga aatactatct caactaaatt aatgacgacg ccgaatctct
351 attttttaat atttatataa gaaatgaaag atgtaaatcg attcaaatca
401 aagttgagga aagagtcgaa tattcattca tcaaatcatt cactccatca
451 taatccgata gatcttttga agaaccgatt aatcggacaa gaataaagat
501 agagtcccat tctacatgtc aatgctgaca acaatgaaat ttatagtaag
551 aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
601 cc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.71e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
602 |
583 |
2.71e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.