Match details
Record ID: |
FJ801054.1 |
Database: |
nt |
Go to original record |
Description: |
Lysiphyllum carronii voucher Weston 2447 (NSW) tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; plastid. |
Taxon: |
Lysiphyllum carronii |
Original size: |
1022 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
598 |
+ |
598 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaac
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaaa agagttcaaa
151 aagtgagaat aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa
201 caaatggagt tgacgggatt tcgtttcgtt agtaaagtag taatccttcc
251 atcgaaactc cagaaaagaa aggatcgaag ataaacgtat atatacatat
301 acgtaccgaa atactatctc aactaaatga atgacgacgc cgaatctcta
351 ttcattaata tttataatga aagatgatgt aaatggattc aaagttgaag
401 aaaaagtcga atattcattc atcaaatcat tcactccatc ataacataat
451 ccgatatttc ttttgaagaa ctgattaatc ggacaagaat aaagatagag
501 tcccattcta catgtcaata ctgacaacaa tgaaatttat agtaatagga
551 aaatccgtcg actttaaaaa tcgtgagggt tcaagtccct ctatcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
598 |
579 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.