Match details
Record ID: |
FJ801072.1 |
Database: |
nt |
Go to original record |
Description: |
Bauhinia tomentosa voucher Kirstenboch Botanical Garden 602/86 tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; plastid. |
Taxon: |
Bauhinia tomentosa |
Original size: |
1050 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
592 |
+ |
592 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctaccaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaga agagttcaaa
151 agtgagaata aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatggagtt gacgggattt cgtttcatta gtaatgtaat ccttccatcg
251 aaactccaga aaagaaagga tcaaagataa acgtatatat acgtatacgt
301 atcgaaatac tatctcaact aaattaatga cgacgccgaa tctctatttt
351 ttaatattta tataagaaat gaaagatgta aatcgattca aagttgagga
401 aagagtcgaa tattcattca tcaaatcatt cactccatca taatccgata
451 gatcttttga agaaccgatt aatcggacaa gaataaagat agagtcccat
501 tctacatgtc aatgctgaca acaatgaaat ttatagtaag aggaaaatcc
551 gtcgacttta aaaatcgtga gggttcaagt ccctctatcc cc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
592 |
573 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.