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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF571570.1 nt Aloysia virgata voucher R. G. Olmst... 1627 bp Aloysia virgata QL-PLN-00-007 564 bp View
EF660604.1 nt Taxus brevifolia voucher 11835 tRNA... 887 bp Taxus brevifolia QL-PLN-00-007 523 bp View
EF660605.1 nt Taxus wallichiana var. wallichiana ... 938 bp Taxus wallichiana var. wallichiana QL-PLN-00-007 522 bp View
EF660606.1 nt Austrotaxus spicata voucher ABG2006... 955 bp Austrotaxus spicata QL-PLN-00-007 521 bp View
EF660607.1 nt Cephalotaxus harringtonia voucher D... 830 bp Cephalotaxus harringtonia QL-PLN-00-007 546 bp View
EF660609.1 nt Taxus sumatrana voucher ABG20051056... 897 bp Taxus sumatrana QL-PLN-00-007 522 bp View
EF660612.1 nt Cephalotaxus lanceolata voucher ABG... 830 bp Cephalotaxus lanceolata QL-PLN-00-007 546 bp View
EF660615.1 nt Pseudotaxus chienii voucher LS20061... 920 bp Pseudotaxus chienii QL-PLN-00-007 524 bp View
EF660616.1 nt Taxus cuspidata voucher DD001 tRNA-... 898 bp Taxus cuspidata QL-PLN-00-007 522 bp View
EF660617.1 nt Cephalotaxus drupacea voucher 20070... 830 bp Cephalotaxus drupacea QL-PLN-00-007 546 bp View
EF660618.1 nt Cephalotaxus fortunei var. alpina v... 830 bp Cephalotaxus fortunei var. alpina QL-PLN-00-007 546 bp View
EF660619.1 nt Cephalotaxus oliveri voucher GL2007... 830 bp Cephalotaxus oliveri QL-PLN-00-007 546 bp View
EF660620.1 nt Taxus wallichiana voucher CY007 tRN... 900 bp Taxus wallichiana QL-PLN-00-007 524 bp View
EF660622.1 nt Amentotaxus yunnanensis voucher AF2... 1016 bp Amentotaxus yunnanensis QL-PLN-00-007 551 bp View
EF660623.1 nt Torreya grandis voucher LS20061206 ... 967 bp Torreya grandis QL-PLN-00-007 536 bp View
EF660624.1 nt Torreya jackii voucher HZ20070101 t... 967 bp Torreya jackii QL-PLN-00-007 536 bp View
EF660625.1 nt Torreya fargesii var. yunnanensis v... 966 bp Torreya fargesii var. yunnanensis QL-PLN-00-007 536 bp View
EF660626.1 nt Cephalotaxus fortunei voucher LS200... 830 bp Cephalotaxus fortunei QL-PLN-00-007 546 bp View
EF660627.1 nt Cephalotaxus koreana voucher 200703... 831 bp Cephalotaxus koreana QL-PLN-00-007 546 bp View
EF660629.1 nt Cephalotaxus hainanensis voucher DZ... 828 bp Cephalotaxus hainanensis QL-PLN-00-007 544 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.