Match details
Record ID: |
EF660623.1 |
Database: |
nt |
Go to original record |
Description: |
Torreya grandis voucher LS20061206 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and trnF gene, partial sequence; chloroplast. |
Taxon: |
Torreya grandis |
Original size: |
967 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
536 |
+ |
536 bp |
|
1 cgaaatcggt agacgctacg gacttaatcg aattgagcct tggtatggaa
51 acttactaag tgatagcttc caaatccagg gaaccctggg atattctgaa
101 tgggcaatcc tgagccaaat ccctttataa gggatgataa ttaatcattt
151 cccagaaagg gataggtgca gagactcgac ggaagctatt ctaacgaatg
201 aatatcattt gaatttgacc caatactatt atctagagag tgccctctgt
251 atataacact taataaatga aacaaaacta acgattagaa cttgagtcgt
301 tctaggcttt tttttaggag cctagctcaa aatcaaattg aatgaactaa
351 ttcattaagt aatccaattt agagcttctt tagaaagaga gttaattcca
401 tttttttaat gaatgattgg acgaggataa agatagagtc caattctaca
451 tgtcaatacc aacaacaatg caaattgcag taggaggaaa atccgttggt
501 tttatagacc gtgagggttc aagtccctct atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.41e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
536 |
517 |
2.41e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.