Match details
Record ID: |
EF660627.1 |
Database: |
nt |
Go to original record |
Description: |
Cephalotaxus koreana voucher 20070303 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and trnF gene, partial sequence; chloroplast. |
Taxon: |
Cephalotaxus koreana |
Original size: |
831 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
546 |
+ |
546 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tagtatggaa
51 acctactaag tgatagcttc caaatgcagg gaaccctggg atattttgaa
101 tgggcaatcc tgagccaaat ccggtttata gaaacatagt tttctttcct
151 agaaaaggat aggtgcagag actcgacgga agctattcta acgaatgaat
201 atcattttaa tttgatcctg tacactatct acagagtgcc ctctgtattt
251 aaaaattgaa aaagtgatac catccataaa acaaaactaa cgattataac
301 ttgagtcgtt ctaggctttt tttttttagg agcctagctt cgaagtgaag
351 gtaatgactc attaagtaat ccaattaaga gcttctctta gaaataaagt
401 gaattcaatt attggaatta atgattggac gaggataaag atagagtcca
451 attctacatg tcattgcaat aacaacaatg caaattgcag taggatgaaa
501 atccgttggt tttatagacc gtgagggttc aagtccctct atcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.46e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
546 |
527 |
2.46e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.