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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OK247983.1 nt Puccinellia parishii trnT-trnL inte... 1719 bp Puccinellia parishii QL-PLN-00-007 611 bp View
OK247984.1 nt Puccinellia pumila trnT-trnL interg... 1713 bp Puccinellia pumila QL-PLN-00-007 611 bp View
OK247985.1 nt Puccinellia pusilla trnT-trnL inter... 1706 bp Puccinellia pusilla QL-PLN-00-007 611 bp View
OK247986.1 nt Puccinellia rupestris trnT-trnL int... 1707 bp Puccinellia rupestris QL-PLN-00-007 611 bp View
OK247987.1 nt Puccinellia tenuifolia trnT-trnL in... 1707 bp Puccinellia tenuifolia QL-PLN-00-007 611 bp View
OK247988.1 nt Puccinellia vaginata trnT-trnL inte... 1708 bp Puccinellia vaginata QL-PLN-00-007 611 bp View
OK247989.1 nt Rhizocephalus orientalis trnT-trnL ... 1600 bp Rhizocephalus orientalis QL-PLN-00-007 615 bp View
OK247990.1 nt Sesleria tenerrima trnT-trnL interg... 1861 bp Sesleria tenerrima QL-PLN-00-007 618 bp View
OK323214.1 nt Lycium barbarum chloroplast, comple... 155656 bp Lycium barbarum QL-PLN-00-007 571 bp View
OK336484.1 nt Cucurbita ficifolia chloroplast, co... 157631 bp Cucurbita ficifolia QL-PLN-00-007 582 bp View
OK349678.1 nt Meconopsis betonicifolia chloroplas... 151935 bp Meconopsis betonicifolia QL-PLN-00-007 600 bp View
OK490499.1 nt Aloysia citrodora chloroplast, comp... 155079 bp Aloysia citrodora QL-PLN-00-007 562 bp View
OK539590.1 nt Hoya carnosa plastid, complete genome. 176807 bp Hoya carnosa QL-PLN-00-007 550 bp View
OK637269.1 nt Digitaria sanguinalis chloroplast, ... 138079 bp Digitaria sanguinalis QL-PLN-00-007 610 bp View
OK649927.2 nt Nyctocalos pinnatum chloroplast, co... 159591 bp Nyctocalos pinnatum QL-PLN-00-007 564 bp View
OL334514.1 nt Benincasa hispida isolate B227 chlo... 156758 bp Benincasa hispida QL-PLN-00-007 593 bp View
OL372240.1 nt Smilax china chloroplast, complete ... 157959 bp Smilax china QL-PLN-00-007 617 bp View
OL397049.1 nt Kalidium foliatum chloroplast, comp... 153773 bp Kalidium foliatum QL-PLN-00-007 615 bp View
OL435707.1 nt Arundo donax chloroplast, complete ... 137157 bp Arundo donax QL-PLN-00-007 621 bp View
OL449699.1 nt Atriplex portulacoides chloroplast,... 153163 bp Atriplex portulacoides QL-PLN-00-007 598 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.