Match details
Record ID: |
OK349678.1 |
Database: |
nt |
Go to original record |
Description: |
Meconopsis betonicifolia chloroplast, complete genome. |
Taxon: |
Meconopsis betonicifolia |
Original size: |
151935 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46201 |
46800 |
+ |
600 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgttttcag aaaaaaatga agggatttct
151 gaaagcgaga ataaaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaatgaatg gagttgactg cgttggtaga ggaatccttc tattaaattt
251 taatttaaac tccataaaga atgagggatg aacctatata cgatacgtac
301 gtatacgtac tgaaatatca aagattctat taatgccgcc ctaaatataa
351 aattttttta cataaaaaaa gtaataattt ttgtgaatct attccaagtt
401 gaaggaagaa tagaaaattc agtgatcaaa ccattcactc catagtctga
451 tagatctttt gacgaactga ttaatcggac gagaataaag atagagtccc
501 gttctacatg tcaatatcaa taccgacaac aatgaaattt atagtaagag
551 gaaaatccgt cgactttata aatcgtgagg gttcaagtcc ctctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.70e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
600 |
581 |
2.70e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.