Match details
Record ID: |
OL334514.1 |
Database: |
nt |
Go to original record |
Description: |
Benincasa hispida isolate B227 chloroplast, complete genome. |
Taxon: |
Benincasa hispida |
Original size: |
156758 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49568 |
50160 |
+ |
593 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ctttttccga aaacaaaaaa aagggtaggt
151 gcagagactc aatggaagct gttctaacaa atggagttga ctacgttgcg
201 ttagtaaagg aatgaatcct tccatcgaaa ctccagaaaa gatgaaagat
251 aaacgtatta cgtactgaaa tactatattg attaatgaca actcgaatct
301 ctcttttttg atatttatat ataaatatca aaaatgatat atcaaaatga
351 acgaattgtt atgaatcgat tccaatatct ccaagttgaa aaaagaatcg
401 aatattcatt gatcaaatca tttactccat catacatagt ctgatagatc
451 ttttgaagaa ctgattaatc agatgcgaat agaataaaga tagagtccca
501 ttctacatgt caataccgac aaaaatgaaa tttatagtaa gaggaaaatc
551 cgtcgacttt aaaaatcgtg agggttcaag tccctctatc ccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.67e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
593 |
574 |
2.67e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.