Match details
Record ID: |
OK539590.1 |
Database: |
nt |
Go to original record |
Description: |
Hoya carnosa plastid, complete genome. |
Taxon: |
Hoya carnosa |
Original size: |
176807 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
53310 |
53859 |
+ |
550 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtaaggaa
51 acctactaag tgatgacttt caaattcaga gaaaccccgg aattaagaaa
101 aagggcaatc ctgagccaaa tcctattttc aggttgagaa aacgaaaaca
151 aggataggtg cagagactcg acggaagctg ttctaacaaa tggagttggc
201 cgcgttggta gagaaatcct tccatcgaaa attcagaaag gatgaaagat
251 atacatacgt attgaatact atatcaaata attaatgccg acccaaacga
301 gtctgtattt tttctataaa aacggaagaa ttggtgtgat tcgattcttt
351 cttcaatgtg gaatcgaata ttcattgatc aaaagattca ctccatagtc
401 tgtagatcct cttttcaaga actggattaa tcggacgaga ataaagatag
451 agtcccgttc tacatgtcaa tgctggcaac aatgcaattt tgagtaagag
501 gaaaatccgt cgacttaaaa aatcgtgagg gttcaagtcc ctctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.47e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
550 |
531 |
2.47e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.