European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OK247935.1 nt Avenula pubescens trnT-trnL interge... 1701 bp Avenula pubescens QL-PLN-00-007 615 bp View
OK247936.1 nt Beckmannia eruciformis trnT-trnL in... 1785 bp Beckmannia eruciformis QL-PLN-00-007 613 bp View
OK247937.1 nt Beckmannia syzigachne trnT-trnL int... 1785 bp Beckmannia syzigachne QL-PLN-00-007 613 bp View
OK247938.1 nt Bellardiochloa argaea trnT-trnL int... 1811 bp Bellardiochloa argaea QL-PLN-00-007 620 bp View
OK247939.1 nt Bellardiochloa doganiana trnT-trnL ... 1786 bp Bellardiochloa doganiana QL-PLN-00-007 613 bp View
OK247940.1 nt Bellardiochloa polychroa trnT-trnL ... 1798 bp Bellardiochloa polychroa QL-PLN-00-007 620 bp View
OK247942.1 nt Catabrosella parviflora subsp. calv... 1640 bp Catabrosella parviflora subsp. calvertii QL-PLN-00-007 602 bp View
OK247943.1 nt Catabrosella variegata subsp. varie... 1640 bp Catabrosella variegata subsp. variegata QL-PLN-00-007 602 bp View
OK247945.1 nt Colpodium chionogeiton trnT-trnL in... 1761 bp Colpodium chionogeiton QL-PLN-00-007 615 bp View
OK247946.1 nt Zingeria biebersteiniana subsp. tri... 1756 bp Zingeria biebersteiniana subsp. trichopoda QL-PLN-00-007 615 bp View
OK247947.1 nt Cornucopiae cucullatum trnT-trnL in... 1720 bp Cornucopiae cucullatum QL-PLN-00-007 565 bp View
OK247948.1 nt Deschampsia cespitosa subsp. cespit... 1728 bp Deschampsia cespitosa subsp. cespitosa QL-PLN-00-007 613 bp View
OK247949.1 nt Hyalopoa nutans trnT-trnL intergeni... 1706 bp Hyalopoa nutans QL-PLN-00-007 611 bp View
OK247950.1 nt Catabrosella araratica trnT-trnL in... 1703 bp Catabrosella araratica QL-PLN-00-007 607 bp View
OK247951.1 nt Milium effusum trnT-trnL intergenic... 1722 bp Milium effusum QL-PLN-00-007 618 bp View
OK247952.1 nt Milium transcaucasicum trnT-trnL in... 1841 bp Milium transcaucasicum QL-PLN-00-007 618 bp View
OK247954.1 nt Paracolpodium colchicum trnT-trnL i... 1732 bp Paracolpodium colchicum QL-PLN-00-007 611 bp View
OK247958.1 nt Phleum alpinum trnT-trnL intergenic... 1786 bp Phleum alpinum QL-PLN-00-007 612 bp View
OK247959.1 nt Phleum montanum trnT-trnL intergeni... 1770 bp Phleum montanum QL-PLN-00-007 606 bp View
OK247960.1 nt Phleum pratense subsp. nodosum trnT... 1778 bp Phleum pratense subsp. nodosum QL-PLN-00-007 610 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.