Match details
Record ID: |
OK247942.1 |
Database: |
nt |
Go to original record |
Description: |
Catabrosella parviflora subsp. calvertii trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Catabrosella parviflora subsp. calvertii |
Original size: |
1640 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
756 |
1357 |
+ |
602 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaagggggtt ctagaactag
151 aatacaaagg aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 gaatcgagtt aatttgtgtt gttagtggaa ttccttctaa attcgagaag
251 gaagggcttt atacatctaa taaataccta tagatactgc catagcaaac
301 gattaatcac agaacccata ttataatata ggttttttat tcttttttag
351 aatgaaatag aaatgattat gaaataaaaa attcataatt tttttagaat
401 tattgtgaat ccattcccat cgaatattta gtaatcaaat ccttcaattc
451 aaagttttga ggtctttaaa aaaggagatt aatcgaacga ggacaaagag
501 agagtcccat tctacatgtc aatactgaca acaatgaaat ttctagtaaa
551 aggaaaatcc gtcgacttta taagtcgtga gggttcaagt ccctctatcc
601 cc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.71e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
602 |
583 |
2.71e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.