Match details
Record ID: |
OK247958.1 |
Database: |
nt |
Go to original record |
Description: |
Phleum alpinum trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Phleum alpinum |
Original size: |
1786 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
835 |
1446 |
+ |
612 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaagggggtt ctcgaactag
151 aatacaaagg aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 gaatcgagtt aattacgttg tgttgttagt gttagtggga ttccttctaa
251 attcgagaaa gaagggcttt atacatctaa taaacacgta tagatactga
301 catagcaaac gattaatcac agaacccata ttataatata ggttctttat
351 tcttttttag aatgaaatag aaatgattat gaaataaaaa attcagaatt
401 tttttagaat tattgtgaat ccattccaat cgaatattta gtaatcaaat
451 ccttcaattc aaagttttga ggtctttaaa aaagtggatt aatcggacga
501 ggacaaagag agagtcccat tctacatgtc aatactgaca acaatgaaat
551 ttctagtaaa aggaaaatcc gtcgacttta taagtcgtga gggttcaagt
601 ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.76e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
612 |
593 |
2.76e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.