Match details
Record ID: |
OK247948.1 |
Database: |
nt |
Go to original record |
Description: |
Deschampsia cespitosa subsp. cespitosa trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Deschampsia cespitosa subsp. cespitosa |
Original size: |
1728 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
766 |
1378 |
+ |
613 bp |
|
1 cgaaatcggt agacgctacg gacttaattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc catgttttga gaaaacaagg gggttctcga
151 actagaatgc aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta agttgtgttg ttagtggaat tccttctcga
251 gaaagaaggg ctttatacat ctaataaaca cgtatagata ctgacatagc
301 aaacgattaa tcacagaacc catattataa tataggttct ttattctttt
351 ttagaatgaa atttgaaata gaaatgatta tgaaataaaa aattcagaat
401 ttttttagaa ttattgtgaa tccattccaa tcgaatattt agtaatcaaa
451 tccttcaatt caaagttttg aggtctttaa aaaagtgtat taatcggacg
501 aggacaaaga gagagtccca ttctacatgt caatactgac aataatgaaa
551 tttctagtaa aaggaaaatc cgtcgacttt ataagtcgtg agggttcaag
601 tccctctatc ccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.76e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
613 |
594 |
2.76e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.