Match details
Record ID: |
OK247935.1 |
Database: |
nt |
Go to original record |
Description: |
Avenula pubescens trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Avenula pubescens |
Original size: |
1701 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
737 |
1351 |
+ |
615 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaactagg tggttctcaa
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttctaaa
251 ttcgagaaag aggggcttta tacatctaat aaacacgtat agatactgac
301 atagcaaacg attaatcaca gaacccatat tataatatat gttctttctt
351 tattcttttt tagaatgaaa tagaaatgat tatgaaataa aaaattcaga
401 atttttttag aattattgtg aatccattcc aatcgaatat ttagtaatca
451 aatccttcaa ttcaaagttt tggggtcttt aaaaaagtgg attaatcgga
501 cgaggacaaa gagagagtcc cattctacat gtcaatactg acaacaatga
551 aatttctagt aaaaggaaaa tccgtcgact ttataagtcg tgagggttca
601 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.77e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
615 |
596 |
2.77e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.