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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW719065.1 nt Oreosparte celebica chloroplast, pa... 176056 bp Oreosparte celebica QL-PLN-00-007 550 bp View
MW719067.1 nt Hoya insularis chloroplast, partial... 176481 bp Hoya insularis QL-PLN-00-007 555 bp View
MW719068.1 nt Hoya hamiltoniorum chloroplast, par... 176245 bp Hoya hamiltoniorum QL-PLN-00-007 550 bp View
MW719069.1 nt Hoya latifolia chloroplast, partial... 176040 bp Hoya latifolia QL-PLN-00-007 550 bp View
MW719071.1 nt Hoya verticillata chloroplast, part... 175227 bp Hoya verticillata QL-PLN-00-007 550 bp View
MW719072.1 nt Hoya thailandica chloroplast, parti... 177648 bp Hoya thailandica QL-PLN-00-007 550 bp View
MW719073.1 nt Hoya diversifolia chloroplast, part... 176087 bp Hoya diversifolia QL-PLN-00-007 554 bp View
MW724787.1 nt Ocimum tenuiflorum voucher MH178055... 151758 bp Ocimum tenuiflorum QL-PLN-00-007 544 bp View
MW751819.1 nt Verbascum thapsus chloroplast, comp... 153392 bp Verbascum thapsus QL-PLN-00-007 568 bp View
MW752129.1 nt Acanthus ilicifolius chloroplast, c... 150758 bp Acanthus ilicifolius QL-PLN-00-007 535 bp View
MW752201.1 nt Salvia sonchifolia voucher GX Hu et... 151470 bp Salvia sonchifolia QL-PLN-00-007 523 bp View
MW752202.1 nt Salvia plebeia voucher GX Hu 0328 c... 151074 bp Salvia plebeia QL-PLN-00-007 529 bp View
MW752206.1 nt Salvia roborowskii voucher Liu et a... 151678 bp Salvia roborowskii QL-PLN-00-007 530 bp View
MW752208.1 nt Salvia umbratica voucher GX Hu 623 ... 151641 bp Salvia umbratica QL-PLN-00-007 529 bp View
MW752212.1 nt Salvia japonica voucher GX Hu & F Z... 151393 bp Salvia japonica QL-PLN-00-007 529 bp View
MW752214.1 nt Salvia prionitis voucher GX Hu & F ... 151387 bp Salvia prionitis QL-PLN-00-007 529 bp View
MW752361.1 nt Fagopyrum leptopodum var. leptopodu... 159323 bp Fagopyrum leptopodum var. leptopodum QL-PLN-00-007 557 bp View
MW760849.1 nt Agastache rugosa chloroplast, compl... 152030 bp Agastache rugosa QL-PLN-00-007 558 bp View
MW762594.1 nt Pseudognaphalium affine chloroplast... 151573 bp Pseudognaphalium affine QL-PLN-00-007 526 bp View
MW770216.1 nt Lilium leichtlinii var. maximowiczi... 152590 bp Lilium leichtlinii var. maximowiczii QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.