Match details
Record ID: |
MW724787.1 |
Database: |
nt |
Go to original record |
Description: |
Ocimum tenuiflorum voucher MH178055 chloroplast, complete genome. |
Taxon: |
Ocimum tenuiflorum |
Original size: |
151758 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46463 |
47006 |
+ |
544 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151 aacgaaaaaa aaaggatagg tgcagagact caatggaagc tgttctaaca
201 aatgggagtt gactgtgctg gtagaggaat ctttccatgg aaactttaga
251 aaggatgaag gataaacgca tctattgaat actatatcaa atggttaatg
301 atggcccaaa tcttttaata tgaaaaaatg gaaaaattgg tgtgaattga
351 ttctaggttg aagaaaaaat aaaatattca tcaactcatt cgctccatag
401 tccgatagat aaagaactga ttaatcggac gagaataaag atagagtccc
451 attctacatg tcaatatcgg caacaatgaa atttatagta agaggaaaat
501 ccgtcgactt taaaaatcgt gagggttcaa gtccctctat cccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.45e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
544 |
525 |
2.45e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.